PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03023.50
Common NameJCGZ_02316, LOC105632122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 219aa    MW: 24816.7 Da    PI: 5.4608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03023.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1787138256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     ++GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g+
  Jcr4S03023.50  87 SFRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFSMRGA 138
                    59*******.**********422...25*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.96E-1986146No hitNo description
SMARTSM003807.9E-3587151IPR001471AP2/ERF domain
PROSITE profilePS5103222.62987145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-2987146IPR001471AP2/ERF domain
PRINTSPR003671.4E-98899IPR001471AP2/ERF domain
PfamPF008476.7E-1388137IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2188147IPR016177DNA-binding domain
PRINTSPR003671.4E-9111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDSSNFYSPN SDFSSESSFG SPESFYSPSF NQDSLPFNEN DSEEMLLYGL ISEATQETSK  60
MDYSNKKIKE EEVSSIIKQN TKKESKSFRG VRRRPWGKFA AEIRDSTRHG IRVWLGTFDS  120
AEAAALAYDQ AAFSMRGAGA VLNFPVERVK ESLEDMKYSH EEDGCSPVVA LKRKHTMRRK  180
IMSRAKKENV VVLEDLGPDY LEQLLSSSEN ATPWSTKFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2686146161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069811.11e-162PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC85e-80ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A067KZD21e-162A0A067KZD2_JATCU; Uncharacterized protein
STRINGPOPTR_0010s08300.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-70ethylene response factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]